Genomics

Different genome analysis:
Genome quality control, assembly and annotation.
Pangenome (core and accessory genome).
Phylogeny at different taxonomy levels.
Biosynthetic gene clusters identification.
Antimicrobial Resistance Genes identification.
Average nucleotide identity.  
Functional enrichment using different insilico databases.
Biocuration.

Metagenomics

16S/18S/ITS amplicon analysis: Sample QC and filtering.Alpha/beta diversity.Taxonomic composition.Shotgun metagenomic data analysis: Sample QC and filtering.Alpha/beta diversity.Taxonomic and functional composition.

Gene expression analysis

Bulk De novo and reference-based RNA-seq analysis. 

Workflows

Design and implement bioinformatic pipelines.